PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051697-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 232aa    MW: 25902.1 Da    PI: 6.7994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051697-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-17147197255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G r+++ +g+++AeIrd    g + +r++lg+f taeeAa a+++a++ ++g
  PSME_00051697-RA 147 RYRGLRRRP-WGKFAAEIRDS---GrRGARVWLGTFKTAEEAAMAYDKAALLIRG 197
                       8********.**********4...5444**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.65E-29146206No hitNo description
PROSITE profilePS5103223.037147205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-30147205IPR001471AP2/ERF domain
SMARTSM003806.2E-34147211IPR001471AP2/ERF domain
PfamPF008474.5E-12147197IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22147207IPR016177DNA-binding domain
PRINTSPR003671.5E-10148159IPR001471AP2/ERF domain
PRINTSPR003671.5E-10171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MALETDSPNN VEGSYQHEHG PVVSAERLLE DVWVHFIAAR KSDQPIHDGL QPANHTKEES  60
CSNVEDQDQD QVQYPLLLPL KENDSEDMIL FQLLNEPAAN LGWTAIHNQQ EMAIPGATGS  120
TAYTPAICNT KMTRAQGEAA EKPSTKRYRG LRRRPWGKFA AEIRDSGRRG ARVWLGTFKT  180
AEEAAMAYDK AALLIRGTRA SLNFPIEVVT NTLADTTEKW SSKLISSRKK QK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-26146208163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-26146208466ATERF1
3gcc_A2e-26146208466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942994.11e-40pathogenesis-related genes transcriptional activator PTI5
RefseqXP_025621916.11e-40pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A445BBQ73e-39A0A445BBQ7_ARAHY; Uncharacterized protein
STRINGEOY281143e-37(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-26ethylene responsive element binding factor 1