PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051708-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 142aa    MW: 15726.1 Da    PI: 4.8841
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051708-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000361183855
                      STCHHHHHHHHHHHHHHH CS
               HLH 38 lsKaeiLekAveYIksLq 55
                      ++Ka++++ A+ YI++L+
  PSME_00051708-RA  1 MNKASVVKDAITYIQHLE 18
                      59**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.8E-7136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-5136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MNKASVVKDA ITYIQHLENQ VKEIQIEIAA LQSNNQSDCS LPVISHEDLS VAEMIEDHSM  60
NAEIPIQAPI MAAPGSEHAG QTVLQVDVCK IDGTRFRITL YCLKQRYLLS QLTKALESIQ  120
ILEIRSSNII SLDGHIVNTM IA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.15e-11FER-like regulator of iron uptake