PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00051768-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 418aa MW: 46417.6 Da PI: 6.8482

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00051768-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.7e-13	223	272	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+ h + Er+RR+ +N+ fe+ r+llP++ +K +K++++ + ++YI+ L PSME_00051768-RA 223 QREIHIQSERQRRKGMNHLFEKMRSLLPNP----TQKTDKSTTVSEIINYIQAL 272 6899***********************9....79**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-15	222	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-13	222	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.86E-12	222	277	No hit	No description
PROSITE profile	PS50888	15.205	222	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	228	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
SLLYQKTEKS KLSNMLHFQS HLAAAPKLEP LSTINHHDDP LRSVLNISSP YQSPWVNPPC 60 FSSPESIPFD EKALELSEMD TLVHQMGDIE SWGTLDQAHC CVKPFNAASM QACSIISDHG 120 QLDILNAFLK KHNPAEDVHV NLNTDTDFLP RARSANTLHM DAVVQQDAFG SLLSDDQEPT 180 ENKSKDHMLK VPAKRSSGTR PAQLRPTKRG AAAPQPDISG ISQREIHIQS ERQRRKGMNH 240 LFEKMRSLLP NPTQKTDKST TVSEIINYIQ ALHQNLEDLN KKRAKVLPSP RGGTIHVKTE 300 PTSAESIQSE CTGSEDSLPV SSEEDCTKQT PHVTLHFNGN DIYITVSCLN KANLLTAIIF 360 VVEDHNLQVI SANFSATDTV AFHCLQVKAL ETPDLVARQA LKCALQKFVC SHTQICFK

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

SLLYQKTEKS KLSNMLHFQS HLAAAPKLEP LSTINHHDDP LRSVLNISSP YQSPWVNPPC  60
FSSPESIPFD EKALELSEMD TLVHQMGDIE SWGTLDQAHC CVKPFNAASM QACSIISDHG  120
QLDILNAFLK KHNPAEDVHV NLNTDTDFLP RARSANTLHM DAVVQQDAFG SLLSDDQEPT  180
ENKSKDHMLK VPAKRSSGTR PAQLRPTKRG AAAPQPDISG ISQREIHIQS ERQRRKGMNH  240
LFEKMRSLLP NPTQKTDKST TVSEIINYIQ ALHQNLEDLN KKRAKVLPSP RGGTIHVKTE  300
PTSAESIQSE CTGSEDSLPV SSEEDCTKQT PHVTLHFNGN DIYITVSCLN KANLLTAIIF  360
VVEDHNLQVI SANFSATDTV AFHCLQVKAL ETPDLVARQA LKCALQKFVC SHTQICFK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115277	0.0	BT115277.1 Picea glauca clone GQ03613_E07 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.3	2e-12	bHLH family protein