PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051808-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 213aa    MW: 24995.3 Da    PI: 8.4939
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051808-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-071181422248
                       T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqkyl 48 
                       + W++Iar ++ +Rt+ ++k++w++++
  PSME_00051808-RA 118 PKWSLIARLLP-RRTD-EIKNHWNTHM 142
                       37*********.****.*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-61749IPR009057Homeodomain-like
SuperFamilySSF466891.45E-5117152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-9118155IPR009057Homeodomain-like
CDDcd001670.00358119142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSSCLQCLHD FPIAGLRRCR KSCRLEWINY MRPDLKLWYF SLEEDEQIVK PRRTDEIKNH  60
WNTDMKKKLV RGGFEPQSHI PLSQPNNSNT TCTSVPVAKH EIPETAKDFE YDRSESSPKW  120
SLIARLLPRR TDEIKNHWNT HMKKKLVRRG FEPQSHIPLS HPNNSNTTCT SVPVAKHEIQ  180
EPADVFEYDR SESSWNQLVA CKAEEHPELS KKF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446914.17e-23PREDICTED: transcription repressor MYB6-like
TrEMBLB1PPT92e-34B1PPT9_PINPS; R2R3-Myb14 transcription factor (Fragment)
STRINGGorai.009G288900.13e-22(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.11e-22myb domain protein 32