PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051866-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 249aa    MW: 28202.8 Da    PI: 5.3897
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051866-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.6e-152265146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      r + T eE+ l+++++ ++G++ W+ Iar ++ gRt++++k++w++
  PSME_00051866-RA 22 RSKITSEEERLIIKLHGRWGNR-WSHIARSLP-GRTDNEIKNYWRT 65
                      6678******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.147116IPR017877Myb-like domain
SuperFamilySSF466891.07E-18273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-9230IPR009057Homeodomain-like
PROSITE profilePS5129422.6611771IPR017930Myb domain
SMARTSM007173.7E-132169IPR001005SANT/Myb domain
PfamPF002496.8E-132365IPR001005SANT/Myb domain
CDDcd001671.49E-112665No hitNo description
Gene3DG3DSA:1.10.10.603.0E-183168IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
LKRTGRSCRL RWVNSLRPGL KRSKITSEEE RLIIKLHGRW GNRWSHIARS LPGRTDNEIK  60
NYWRTRIKGK LNLQDERGSC GMDVDSPEQF QSSLDSSCLP ISSQQPPDNE SEEVSLIHEL  120
NGEYAVFMQG ETRHDPTSQA NDDGQQGAAS THQDLEGSEN RFFHNSLLYN FSVGSLESLL  180
YSSQLCADGA TQDGGIPASA SYMVASPEAF SDSETYLSRY SDVLWNMDEE DDRFNGSKHN  240
VSRNDRRSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1737240109B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.28e-34myb domain protein 59