PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051914-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 84aa    MW: 9384.77 Da    PI: 4.7025
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051914-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-112749325
                      S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                      +  C+f++++GtCky ++CkF H
  PSME_00051914-RA 27 EDVCPFYMKNGTCKYAATCKFDH 49
                      678******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-52451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4742452IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-82649IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-62850IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-62850IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MNEKTRLAYE SLRFVSLIGG INSLEGEDVC PFYMKNGTCK YAATCKFDHQ PLGEVVSKVV  60
AMYATTEDIL EDNNKMNSGI AWLI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QRD76e-12A0A0C9QRD7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12887_3264 transcribed RNA sequence
TrEMBLA0A0C9RL267e-12A0A0C9RL26_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12886_3158 transcribed RNA sequence
TrEMBLA0A0D6QT157e-12A0A0D6QT15_ARACU; Uncharacterized protein
TrEMBLA0A0D6QT757e-12A0A0D6QT75_ARACU; Uncharacterized protein
TrEMBLA0A0D6QUI37e-12A0A0D6QUI3_ARACU; Uncharacterized protein
TrEMBLA0A0D6QVA87e-12A0A0D6QVA8_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.17e-14floral homeotic protein (HUA1)