PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00051919-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 389aa MW: 43161.6 Da PI: 8.9983

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00051919-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	51	3.9e-16	339	370	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh lsefD++krsCrrrLa+hnerrrk+q+ PSME_00051919-RA 339 CRFHILSEFDDGKRSCRRRLAGHNERRRKPQP 370 69***************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	14.246	291	368	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.12E-13	339	373	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.5E-4	339	355	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-8	340	367	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MDKSLRWQCW CTVGRLGVAR VRGSIKGAGR RKGTTLGMEA EPQVKGTQDE AGLLRLFWKG 60 TEDWKRYSED LGGSKRFSFK GRWLCREVPP VSGNGFTWTV KTIISGNSVL MDWDMKASSS 120 PWDWENIMLF PNRGTDVGKR AQWENDAGGG GDALMDDGSV HNGSVYSPGC GSASTFGYGS 180 SSRSSVSVDC SLKVEPDLCK IKMGPMESSF VEDRNVDFLD LRSQVEPRTD EPEGGKSSQK 240 RGNVELNGSK HSCGTNELQE PQRGSKDSKF KARTVHAEDK VIKNMEKNSY APAIPVSTCS 300 GDSHIGLKLG KRTYFEDISG GVRYHLIKLL FSICLDPVCR FHILSEFDDG KRSCRRRLAG 360 HNERRRKPQP DSMAINSVRF APSFYGTVE

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MDKSLRWQCW CTVGRLGVAR VRGSIKGAGR RKGTTLGMEA EPQVKGTQDE AGLLRLFWKG  60
TEDWKRYSED LGGSKRFSFK GRWLCREVPP VSGNGFTWTV KTIISGNSVL MDWDMKASSS  120
PWDWENIMLF PNRGTDVGKR AQWENDAGGG GDALMDDGSV HNGSVYSPGC GSASTFGYGS  180
SSRSSVSVDC SLKVEPDLCK IKMGPMESSF VEDRNVDFLD LRSQVEPRTD EPEGGKSSQK  240
RGNVELNGSK HSCGTNELQE PQRGSKDSKF KARTVHAEDK VIKNMEKNSY APAIPVSTCS  300
GDSHIGLKLG KRTYFEDISG GVRYHLIKLL FSICLDPVCR FHILSEFDDG KRSCRRRLAG  360
HNERRRKPQP DSMAINSVRF APSFYGTVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104023	0.0	BT104023.1 Picea glauca clone GQ02805_I07 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K0M728	1e-116	A0A0K0M728_PINTB; SPL3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57920.1	9e-14	squamosa promoter binding protein-like 15