PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051967-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 107aa    MW: 11838.3 Da    PI: 6.8016
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051967-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.6e-0966101337
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl 37 
                       +R+++t++ +++L+el++   r+p+ e++++++++l
  PSME_00051967-RA  66 SRWNPTAKKVTILKELYKGgMRTPTSEQIQQISSQL 101
                       7*****************99**************99 PP
2Wus_type_Homeobox59.86e-2064107245
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGki 45 
                        +++RW+Pt+++++iL+elyk G+rtP++e+iq+i+++L++yGki
   PSME_00051967-RA  64 SESRWNPTAKKVTILKELYKGGMRTPTSEQIQQISSQLRRYGKI 107
                        679***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000468.6E-766101IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MATLDLSGSY MSWQQQLDLV AATPTYVPHT GVGYEIVVEH HGGDASSSPE NEGSMLRITD  60
QPASESRWNP TAKKVTILKE LYKGGMRTPT SEQIQQISSQ LRRYGKI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1006185e-36BT100618.1 Picea glauca clone GQ0032_I05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8K43e-28R9R8K4_PICAB; WUSCHEL homeobox protein WOX5
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.13e-16WOX family protein