PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052007-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 256aa    MW: 28077.5 Da    PI: 7.8051
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052007-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.76.2e-16565257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R++++++q+++Le l ++   +p +ee++++  +l    ++++ +V++WFqNr+a+ k+
  PSME_00052007-RA  5 KTRWNPKPDQIKILEGLLNSgMVNPPREEIKRIRGQLekfgHVEDVNVFYWFQNRKARVKR 65
                      89*****************99*************************************997 PP
2Wus_type_Homeobox104.28.4e-34466264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW+P+p+QikiLe l +sG+++P++eei+ri+ +Le++G++ed NVfyWFQNrkaR ++k
   PSME_00052007-RA  4 AKTRWNPKPDQIKILEGLLNSGMVNPPREEIKRIRGQLEKFGHVEDVNVFYWFQNRKARVKRK 66
                       689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.297166IPR001356Homeobox domain
SMARTSM003893.8E-4370IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-6573IPR009057Homeodomain-like
SuperFamilySSF466893.2E-10569IPR009057Homeodomain-like
CDDcd000861.26E-5567No hitNo description
PfamPF000461.1E-13565IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MPVAKTRWNP KPDQIKILEG LLNSGMVNPP REEIKRIRGQ LEKFGHVEDV NVFYWFQNRK  60
ARVKRKRQQQ DAEKSESRAK GARPLSSSSS TSTTSTSTSD LSQPVKIVNQ PHSSSAGPAS  120
SFSGHHCNPQ VNQKISTSQY SNMQPIGAGE ATERRGILNE GGVLEDPINI DNSVITVIVN  180
DISIQVPKDP INLRAFFGDD ALLLHSSGHS VLVNERGFTI QGLEDGASYF LVVEMTLDGI  240
LNHLSTFVNT LGTLDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16068ARVKRKRQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8674e-94R9R867_PICAB; WUSCHEL homeobox protein WOX8D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.18e-24homeobox-3