PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052029-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 410aa    MW: 46582.9 Da    PI: 8.6212
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052029-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.31.4e-06259278120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp Cgk+F+r  n++ H+
  PSME_00052029-RA 259 FSCPVCGKTFNRYNNMQMHM 278
                       89*****************9 PP
2zf-C2H211.60.00087343365123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +C+k F  + + ++H +++
  PSME_00052029-RA 343 FMCRKCSKQFAVRGDWRTHEKNC 365
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.96E-6252281No hitNo description
PROSITE profilePS5015710.97259286IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-6259278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.017259281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280261281IPR007087Zinc finger, C2H2
SMARTSM00355190306338IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.43E-5325363No hitNo description
Gene3DG3DSA:3.30.160.602.0E-4330363IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035566343363IPR015880Zinc finger, C2H2-like
SMARTSM00355160369392IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSYKYVFMGF NDGFDLVSIF TSFSVLQAAQ SHSTMQKPED GLALMSQREI FYMRRYHTDI  60
GSPAPMTARP ISFTEWLKPK PSSGMLAAAS DLPMAIPCME TLDPRSNLTT YIQPASALYS  120
AHSYTQQALN QCPLVQPERC DSPPLREALP LLSLSPPRNP TDHNLERNDR KDDEDHDHDE  180
AFNDNVTVAL HIGPPSTNNY NYDDNSGAAV SFKADHHQSG TNYSYDHAAD KEKLRAGRVP  240
EGQYWIPTSA QILIGPTQFS CPVCGKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM  300
LRLPCYCCAQ GCKNNIDHPR AKPLKDFRTL QTHYKRKHGM KPFMCRKCSK QFAVRGDWRT  360
HEKNCGKLWF CTCGSDFKHK RSLKDHIRAF GHGHAXXXXX XXXXXXXXXX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396645.11e-123zinc finger protein WIP6-like
SwissprotQ8W0301e-109ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A0K9PDS71e-122A0A0K9PDS7_ZOSMR; Zinc finger-like protein
STRINGPP1S359_44V6.11e-126(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]