PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00052044-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SRS

Protein Properties

Length: 377aa MW: 39697.4 Da PI: 8.0891

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052044-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	203.5	5.9e-63	179	319	6	154
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 +CqdCGnqakkdC h+RCRtCCksrgfdC thvkstWvpaa+rrerqq+++ s++ + +kr+r + +a + ++ + ++ PSME_00052044-RA 179 NTCQDCGNQAKKDCFHMRCRTCCKSRGFDCPTHVKSTWVPAARRRERQQHQEEGSRR------NVPTKRQRPAAIIPDAAPNPSHSV--AAQV 263 68*******************************************9998876444......455666666655666666555533..3456 PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++slP+ev+ + vf+cv+v++++dge+e+aYq++v+igGh+fkG+LydqGl++ PSME_00052044-RA 264 LTVKESLPAEVRGQTVFKCVKVTAIEDGEDEYAYQATVKIGGHIFKGVLYDQGLDT 319 778889*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.3E-59	179	318	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.9E-28	180	222	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.4E-27	270	317	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MNVATVATAV GGSGGGGGAS GSRRTAGGGG GEDQEIQREY ICSTSSSAAA ARKNRNLNLV 60 PFQGFDGGSY GYPSHGIVSN SDVGMAMGGM VGLGVVGGGV GIGVGAGGNV SIDLANIYSQ 120 RGGVSSLLSA PQATSEEAWK QQQQMLFEDK AMIMEKSSEN KEDQDEKKKG NLVLGLPSNT 180 CQDCGNQAKK DCFHMRCRTC CKSRGFDCPT HVKSTWVPAA RRRERQQHQE EGSRRNVPTK 240 RQRPAAIIPD AAPNPSHSVA AQVLTVKESL PAEVRGQTVF KCVKVTAIED GEDEYAYQAT 300 VKIGGHIFKG VLYDQGLDTS SIGPSSLADH QFGGRSMAST STMVDPAQMY GASSSAFLGG 360 TKYVNPVSYD IKMQYLC

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MNVATVATAV GGSGGGGGAS GSRRTAGGGG GEDQEIQREY ICSTSSSAAA ARKNRNLNLV  60
PFQGFDGGSY GYPSHGIVSN SDVGMAMGGM VGLGVVGGGV GIGVGAGGNV SIDLANIYSQ  120
RGGVSSLLSA PQATSEEAWK QQQQMLFEDK AMIMEKSSEN KEDQDEKKKG NLVLGLPSNT  180
CQDCGNQAKK DCFHMRCRTC CKSRGFDCPT HVKSTWVPAA RRRERQQHQE EGSRRNVPTK  240
RQRPAAIIPD AAPNPSHSVA AQVLTVKESL PAEVRGQTVF KCVKVTAIED GEDEYAYQAT  300
VKIGGHIFKG VLYDQGLDTS SIGPSSLADH QFGGRSMAST STMVDPAQMY GASSSAFLGG  360
TKYVNPVSYD IKMQYLC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9LQZ5	2e-49	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
STRING	XP_010276642.1	5e-55	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-44	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]