PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052063-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 261aa    MW: 29267.9 Da    PI: 10.1042
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052063-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.39e-142675255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k rg Wv+eIr p   g rk+ +lg++  a++Aa+a++aa  +l+g
  PSME_00052063-RA 26 HFKGIRLRK-RGCWVSEIRMP---GSRKKLWLGSYQGAQQAARAYDAAVYCLKG 75
                      69******9.8*********8...435************************998 PP
2AP255.31.6e-17168217255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++kG+rw+k +grWv+eIr p++   r + +lg++ ta++Aa+a++aa  +l+g
  PSME_00052063-RA 168 QFKGIRWRK-WGRWVSEIRMPKS---REKLWLGSYPTAQQAARAYDAAVYCLRG 217
                       69*******.**********954...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-232584IPR001471AP2/ERF domain
PfamPF008471.9E-72675IPR001471AP2/ERF domain
SMARTSM003804.0E-232689IPR001471AP2/ERF domain
CDDcd000181.07E-182685No hitNo description
SuperFamilySSF541712.88E-162685IPR016177DNA-binding domain
PROSITE profilePS5103218.2682683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-28167226IPR001471AP2/ERF domain
PROSITE profilePS5103221.377168225IPR001471AP2/ERF domain
SMARTSM003802.9E-29168231IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-19168227IPR016177DNA-binding domain
CDDcd000183.51E-23168227No hitNo description
PfamPF008471.2E-10169217IPR001471AP2/ERF domain
PRINTSPR003675.9E-7169180IPR001471AP2/ERF domain
PRINTSPR003675.9E-7191207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDKPSPPEHD DAHAREDEDQ RQNFRHFKGI RLRKRGCWVS EIRMPGSRKK LWLGSYQGAQ  60
QAARAYDAAV YCLKGPNANF NFPNSVPSIP SASSLSREQI QLAAGKHALD RLNSSPPSLK  120
IISNMGTEEA ALPSRLDSGP PDMDKPSPEE HDAAQARDDE DRGQNCRQFK GIRWRKWGRW  180
VSEIRMPKSR EKLWLGSYPT AQQAARAYDA AVYCLRGPNA KFNFPNSVPD IPSASSLSRR  240
QIQHAAVKYA LNPLHSNPPS V
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389872.12e-33PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC21e-31ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2P5YQE52e-65A0A2P5YQE5_GOSBA; Uncharacterized protein
STRINGXP_010273874.12e-32(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]