PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052064-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 199aa    MW: 22094.5 Da    PI: 4.7017
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052064-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-162372255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++G+r++k +g+Wv+eIr p++   r++++lg+++++e+Aa+a++ a  +l+g
  PSME_00052064-RA 23 QFTGIRQRK-WGKWVSEIRMPNS---RAKIWLGSYDSPEKAARAYDFALCCLRG 72
                      589*****9.**********933...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-272281IPR001471AP2/ERF domain
SMARTSM003806.9E-312386IPR001471AP2/ERF domain
CDDcd000181.92E-272381No hitNo description
PROSITE profilePS5103220.0862380IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-192480IPR016177DNA-binding domain
PRINTSPR003671.0E-72435IPR001471AP2/ERF domain
PfamPF008475.7E-102472IPR001471AP2/ERF domain
PRINTSPR003671.0E-74662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVKALPKQSS HGKPENRSMK SRQFTGIRQR KWGKWVSEIR MPNSRAKIWL GSYDSPEKAA  60
RAYDFALCCL RGSKARFNFP NCPPEIPCAS SLSPPQIQAA AARFATEDFR LPSEDDTAFS  120
SSSSEAESGI DSQHNSAEAE SGIDSQQISG EQGPTFWDSL VLEDLDSGES LNLEHFPPLD  180
FSLEDFGFLF EQAKDGVFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0815891e-105EF081589.1 Picea sitchensis clone WS0278_D08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261769.12e-41PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA9NK161e-86A9NK16_PICSI; Uncharacterized protein
STRINGXP_010261769.18e-41(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-41ERF family protein