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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00052132-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | bHLH | ||||||||
| Protein Properties | Length: 276aa MW: 30958.2 Da PI: 6.9286 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 37.5 | 4.1e-12 | 90 | 141 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
r++ hnerEr RR+++N +++Lr+llP + +++Kls ++ ++ +YI +L
PSME_00052132-RA 90 RKAFHNERERYRRKNLNVLYSKLRSLLPRtN---SKRKLSIPNTVCRVLKYIPEL 141
6889*************************66...8888**************888 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 1.27E-10 | 89 | 146 | No hit | No description |
| SuperFamily | SSF47459 | 1.31E-13 | 89 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 13.522 | 89 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 3.2E-9 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.5E-10 | 90 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.0E-5 | 95 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
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| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 276 aa Download sequence Send to blast |
MFAYSGFSSA ELASRCHPDN YDLVLGRLSN AAGEIPAHQP AMNTIPATYW QFDQQPYDDV 60 LDFGQTHQIH LANSEHPNGE DSLPTKPLSR KAFHNERERY RRKNLNVLYS KLRSLLPRTN 120 SKRKLSIPNT VCRVLKYIPE LRNEIEQLGK QRDQLLSIAK PSCETSKCAS TGEAEFVDPN 180 PNPTLGSSHP PDVKVNAPFG SSELMITICT CNDGFLFSAL LLVLEKEGLD LLNASTFFSE 240 NKVYLHLQMI PLKSELDTNL LQNKLLVLCE KSLQAA |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT5G04150.1 | 1e-18 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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