PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052135-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 261aa    MW: 29637.1 Da    PI: 6.0326
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052135-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.93.9e-093481454
                      HHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox 14 eLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54
                      +L   Fe+   +ps++e++ + ++l    ++++++V++WF Nr+++
  PSME_00052135-RA  3 ILIPKFESgMVKPSRHEIKTIIAQLqefgQVEDANVFYWFRNRKYR 48
                      56667998899*********************************98 PP
2Wus_type_Homeobox59.39.2e-202481460
  Wus_type_Homeobox 14 kiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60
                       +iL   ++sG++ P+++ei+ i a+L+e+G++ed+NVfyWF Nrk R
   PSME_00052135-RA  2 RILIPKFESGMVKPSRHEIKTIIAQLQEFGQVEDANVFYWFRNRKYR 48
                       678888***************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000469.7E-7348IPR001356Homeobox domain
SuperFamilySSF466894.59E-5352IPR009057Homeodomain-like
CDDcd061741.59E-4183255IPR020846Major facilitator superfamily domain
PfamPF000833.1E-18184260IPR005828Major facilitator, sugar transporter-like
SuperFamilySSF1034733.4E-7184260IPR020846Major facilitator superfamily domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0022857Molecular Functiontransmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MRILIPKFES GMVKPSRHEI KTIIAQLQEF GQVEDANVFY WFRNRKYRIF NRVERTEKNT  60
KAIINVANNT ADNSLHNNGE SCSSYVLEDP FFTQDDPFFT HQIDFFTLAN RTLLMIRGTG  120
GSFNYELSIP VLINNIPVEV PMGSINIRDA FRENAVLLHS TGEPVLVKEW GFTPECLQQV  180
TEYYVAVPLY LLELAPTKLH GGLNMMFRLA TTLGIFIENM VNYGIENIKP SGWRLSLGLD  240
AVPAILLKVG GFFLPETPNS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6h7d_A2e-20186261156231Sugar transport protein 10
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH93e-46D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.12e-15WUSCHEL related homeobox 11