PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052148-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 113aa    MW: 12859.7 Da    PI: 9.8611
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052148-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.91.9e-147841794
               NAM 17 eyLkkkvegkklel.eevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
                      +yLkk+++    ++ ++ i  vd+y++ Pw+Lp   ++ ++ +w+fF+++++k+    r+n+ tksgy katg+d+++++
  PSME_00052148-RA  7 FYLKKRIQLAGYPFnFNKIIPVDLYQYGPWELPgLVHDVGDGQWFFFVPSHQKK--CIRPNKLTKSGYSKATGSDRKIHR 84
                      79***9998885551255999************545566888********9987..57********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.6811113IPR003441NAC domain
SuperFamilySSF1019412.75E-14787IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MGGAAGFYLK KRIQLAGYPF NFNKIIPVDL YQYGPWELPG LVHDVGDGQW FFFVPSHQKK  60
CIRPNKLTKS GYSKATGSDR KIHRPGLLPQ WFSGSEHRRE GHSHGYEPPT ECV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A075M5N53e-18A0A075M5N5_9SPER; NAC domain protein
STRINGTraes_7DL_D05DA373C.22e-15(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.18e-18NAC domain containing protein 35