PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052155-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 272aa    MW: 29851.2 Da    PI: 4.9213
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052155-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.2e-1660109255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr++  +g+Wv+eI++p   +k++r+ lg+f+t+e+Aa+a++ a  +l+g
  PSME_00052155-RA  60 TYRGVRRRN-WGKWVSEIKEP---NKQTRICLGSFDTPEMAARAYDVAEVYLKG 109
                       69****877.**********8...336*********************988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-2660124IPR001471AP2/ERF domain
PROSITE profilePS5103220.99560118IPR001471AP2/ERF domain
PfamPF008472.3E-1060107IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1860119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.5E-2760119IPR001471AP2/ERF domain
PRINTSPR003672.0E-86172IPR001471AP2/ERF domain
CDDcd000181.10E-2561120No hitNo description
PRINTSPR003672.0E-88399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDKEASSLPK TIVPSSSTDT GGASSKYAST AEGGVKRIRT QDEAVPSLTQ QRTLNMKYPT  60
YRGVRRRNWG KWVSEIKEPN KQTRICLGSF DTPEMAARAY DVAEVYLKGK KHALLNFPEL  120
IDYIPHLLSL SARHIQSATA EAAAAFYSAS AGYSGWPSDS NKRTRRSPRN PPVSNEPSSS  180
SSYQLCTGSV SSDFETASVE LSGQTDSSVS SSVCTPTECV GVSECVVVEE DLFESFKLFT  240
DLAEALLLSP PPLFSSYEEE HNLEEIFLWS DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1452118672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABJ61e-104D5ABJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-31ERF family protein