PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00052169-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 221aa MW: 25910.4 Da PI: 7.1774

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052169-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.6	1.4e-41	20	146	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrF Pt+eel+++yLkk+v+g + l+l+ +i++v++y+++Pw+L ++ +e++w+fF++rd++++ r++r+t sgyWkatg+d++v PSME_00052169-RA 20 PGFRFYPTEEELLSFYLKKRVTGCDqLNLDIIIPTVQLYHYDPWELAgFVHYVGERQWFFFVPRDHNKS-CPRPSRMTVSGYWKATGSDRAVR 111 9******************99875777667**********9656677999*****9876.68******************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +glkk+Lvfykg+ap++++tdW+m+eyr+ PSME_00052169-RA 112 NELLQCIGLKKILVFYKGKAPRAQRTDWIMNEYRM 146 99999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-45	17	167	IPR003441	NAC domain
PROSITE profile	PS51005	48.062	18	167	IPR003441	NAC domain
Pfam	PF02365	5.7E-23	20	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MQEEIYNDWK VKGEEIMDLP GFRFYPTEEE LLSFYLKKRV TGCDQLNLDI IIPTVQLYHY 60 DPWELAGFVH YVGERQWFFF VPRDHNKSCP RPSRMTVSGY WKATGSDRAV RNELLQCIGL 120 KKILVFYKGK APRAQRTDWI MNEYRMPDSR LSAPKKTDIV LCRIYRKAAS NKSMEHPATQ 180 DYLDKEETVV SGDNYGEKSH SVTLDHHDSY QLSNPVEKSD V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-41	20	170	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-41	20	170	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-41	20	170	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-41	20	170	19	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-41	20	170	22	171	NAC domain-containing protein 19
3swm_B	2e-41	20	170	22	171	NAC domain-containing protein 19
3swm_C	2e-41	20	170	22	171	NAC domain-containing protein 19
3swm_D	2e-41	20	170	22	171	NAC domain-containing protein 19
3swp_A	2e-41	20	170	22	171	NAC domain-containing protein 19
3swp_B	2e-41	20	170	22	171	NAC domain-containing protein 19
3swp_C	2e-41	20	170	22	171	NAC domain-containing protein 19
3swp_D	2e-41	20	170	22	171	NAC domain-containing protein 19
4dul_A	2e-41	20	170	19	168	NAC domain-containing protein 19
4dul_B	2e-41	20	170	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	2e-60	NAC domain-containing protein 22-like
Refseq	XP_010918221.2	2e-59	NAC domain-containing protein 22
Swissprot	Q10S65	4e-53	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	1e-104	A0A075M5N5_9SPER; NAC domain protein
STRING	Pavir.Db00028.1.p	1e-59	(Panicum virgatum)
STRING	XP_008791987.1	7e-60	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	4e-54	NAC domain containing protein 35

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]