PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052185-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 336aa    MW: 37564.6 Da    PI: 7.893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052185-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10166214555
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       h+ +Er RR++++   + L +llP+     +++K   +e L + v+YI++Lq
  PSME_00052185-RA 166 HKFAERERRNKMKRLCSSLMSLLPEeY---HKPKHPLSEQLLESVNYIRHLQ 214
                       8999*********************66...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.033161213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-11165228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.65E-8166218No hitNo description
PfamPF000104.4E-7166214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-9166227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0024167219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEDFQLSSSA YLAAACLPHY DENIIAQEDI QIRTPVKSNK FHVQPRTCIN DDDAHAPIIF  60
DASFDALSSK TPHDYGLLGT ASYKPMVQHE QTAEDYSSPA ITQCWQKFVA NVGEPAEILI  120
SNSTASALLN SRNSVLQQTR SHRCKKAGAD AGHKASRGCI GNDHVHKFAE RERRNKMKRL  180
CSSLMSLLPE EYHKPKHPLS EQLLESVNYI RHLQDKVKEL IKKRDELILL ATVKPFSNNS  240
SNAKTLQVLE TLPTIRVSRF GSGIQVTANC FRNQIDVSSI VMVLEEAGVE VVSATVSAIN  300
ARVFYSIHSK QLSDSRHFDN AVLHGRIDQV MKEAFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.18e-20bHLH family protein