PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052260-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 286aa    MW: 32183.9 Da    PI: 6.5118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052260-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31184241259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG+K vk+s++prsYYrC+ ++C+vkk+ver+ +d+ ++++tYeg+Hnhe
  PSME_00052260-RA 184 EDGYKWRKYGRKLVKSSPHPRSYYRCSESNCSVKKRVERDPSDEGLLITTYEGTHNHE 241
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-32170243IPR003657WRKY domain
SuperFamilySSF1182903.4E-27176243IPR003657WRKY domain
PROSITE profilePS5081130.09178243IPR003657WRKY domain
SMARTSM007741.9E-33183242IPR003657WRKY domain
PfamPF031066.3E-25184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDLWGVICDN SQSGQENTQS ADRGLDPFNS LLWYNPIAAN AFSSLNQEFN INPQAQAQAQ  60
AQTQTQALAP APLETQKIDK DLWTQYLVEE KGSEKNEKQE MKTEWMSHCH SPVAQSVRSQ  120
EDQHSEICNV EEHLSEISDG NANKTTSVEG DIADSGKIIK KRKIKTEKGP RYAFKTRSET  180
DVLEDGYKWR KYGRKLVKSS PHPRSYYRCS ESNCSVKKRV ERDPSDEGLL ITTYEGTHNH  240
ESPSIIYYIG KPIVLPQQGA KPAIVLVNAS ICPEPLIKYT SHQAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24173244778Probable WRKY transcription factor 4
2lex_A2e-24173244778Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1034211e-109BT103421.1 Picea glauca clone GQ0251_J23 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6RB882e-77A0A0D6RB88_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-33WRKY DNA-binding protein 50