PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052455-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 239aa    MW: 26350 Da    PI: 4.1971
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052455-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.8e-162472355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +kG+r +k +g+Wv+e+r p++   + r++lg+++t+e+Aa+a++ a  +l+g
  PSME_00052455-RA 24 FKGIRMRK-WGKWVSEVRMPNS---KGRIWLGSYDTPEKAARAYDFAVYCLRG 72
                      8*****99.**********832...49********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.9432380IPR001471AP2/ERF domain
SMARTSM003807.8E-312386IPR001471AP2/ERF domain
PfamPF008472.3E-92472IPR001471AP2/ERF domain
CDDcd000189.08E-272482No hitNo description
PRINTSPR003671.9E-82435IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-282481IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-192482IPR016177DNA-binding domain
PRINTSPR003671.9E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAKPSSNQND HIKPENSSLK PRPFKGIRMR KWGKWVSEVR MPNSKGRIWL GSYDTPEKAA  60
RAYDFAVYCL RGSKAKFNFP YSPPEIPNAS SLSPPQIQAA AAQFATEEFE LPSEDNATFS  120
SSCSKSESSV EGQEISGPAF WDSVLEDPEI PYASSLSPPQ IQAAAAKSAT EEFQQLSEED  180
NAAFSSSCSK AESGIEGQEN WGSAFWDSIF EDLDSCDSIT LDDFPPIDMR MEDYGFCSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1424811573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1028091e-103BT102809.1 Picea glauca clone GQ02016_M05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPP62e-64B8LPP6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-32ERF family protein