PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052512-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 209aa    MW: 24320.8 Da    PI: 10.0842
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052512-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.86.1e-25111168259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+W KY +K vk+ ++pr+Y+rC+ ++C vkk ver+a+d+ ++++ Y g+Hnhe
  PSME_00052512-RA 111 EDGYKWHKYRKKFVKNGPNPRNYFRCSDNNCGVKKTVERDAHDKGIFITSYLGKHNHE 168
                       8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-2699170IPR003657WRKY domain
SuperFamilySSF1182903.14E-23104170IPR003657WRKY domain
PROSITE profilePS5081127.313105170IPR003657WRKY domain
SMARTSM007746.7E-24110169IPR003657WRKY domain
PfamPF031062.2E-19111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
WCYVREAYCG LQYKALLLNS HLCSFQIQLN SGLVRESLNR SHQVRRPAVR LQLSSTLHGL  60
QKLKSILLRI WQADYKSIEP GYISPNKRRK RKAEQGAKYA FLNRSDTDIL EDGYKWHKYR  120
KKFVKNGPNP RNYFRCSDNN CGVKKTVERD AHDKGIFITS YLGKHNHEIP SVIYYTLDPE  180
ILVQLPRQTT GSPIFSSMNY VPGCSEQHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-201051711278Probable WRKY transcription factor 4
2lex_A4e-201051711278Probable WRKY transcription factor 4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-25WRKY DNA-binding protein 51