PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00052557-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Trihelix

Protein Properties

Length: 166aa MW: 18729.2 Da PI: 6.5019

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052557-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.6	1.2e-16	90	162	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt+++v++Li+++ ++++++ ++ +W+ vs+ m+++gf++sp+qC +k+ l kryk++++ + t es+++c PSME_00052557-RA 90 WTNHKVRHLIQVVCNVDKEFTKE-----KWKYVSELMMQKGFSVSPQQCLDKFHVLVKRYKRMNDLLGIDTHESHTNC 162 ****************99876.....***********************************9998877777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.160.20.10	1.6E-5	2	32	IPR012334	Pectin lyase fold
SuperFamily	SSF51126	3.34E-15	3	72	IPR011050	Pectin lyase fold/virulence factor
Gene3D	G3DSA:2.160.20.10	1.9E-9	33	72	IPR012334	Pectin lyase fold
Pfam	PF00295	7.3E-7	34	72	IPR000743	Glycoside hydrolase, family 28
Pfam	PF13837	2.8E-13	88	149	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004650	Molecular Function	polygalacturonase activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MQFETVNRLT FEGGGYLDGQ GASWWSQNCA NNDGLKIQAP GDSPNTDGIH VEQSSNVKII 60 SVTIGTGNLD CLVAEMVDLQ KNSEGPRMGW TNHKVRHLIQ VVCNVDKEFT KEKWKYVSEL 120 MMQKGFSVSP QQCLDKFHVL VKRYKRMNDL LGIDTHESHT NCVENL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-13	sequence-specific DNA binding transcription factors