PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052620-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 383aa    MW: 43628.4 Da    PI: 5.4492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052620-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-151461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed+ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
  PSME_00052620-RA 14 RGPWTAREDLLLTKYIEDHGEGQWRALPKKAGLLRCGKSCRLRWMNYL 61
                      89******************************99************97 PP
2Myb_DNA-binding51.23e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + +E+el+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00052620-RA  67 RGNISVDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWNTHL 112
                       788999****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.919961IPR017930Myb domain
SuperFamilySSF466894.97E-2811108IPR009057Homeodomain-like
SMARTSM007175.8E-131363IPR001005SANT/Myb domain
PfamPF002495.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-221568IPR009057Homeodomain-like
CDDcd001677.10E-101661No hitNo description
PROSITE profilePS5129425.72162116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002493.9E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2469116IPR009057Homeodomain-like
CDDcd001674.77E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTAR EDLLLTKYIE DHGEGQWRAL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI SVDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNFWNT HLSKKLMMKG  120
IDPKTHKPAP ERVHKPRRMM KEIEDQETES MEHCMAEKDV SSSKLGVQPI QVPKPNRYIC  180
FPRHLSASLI NSDVQDVLLS PSIDLNSPCK NMQASLDSEL SSSGMLSDMN PIDELGHEVS  240
NLPQQSDPED CFPWACIEDW PSEFQPTEAK CISNEEELPT NENNHIIPVP QTKLICRNNK  300
PENCQNTLQK IYEEYLQELL QDDTVAINAE MVSATTKNSG DHDHQNNIFP EGITSVWECL  360
EGDDHDVLLN DNQRASETLS LHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23121165108B-MYB
1h8a_C4e-231211625128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1312240.0KU131224.1 Picea abies transcription factor MYB35 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9360.0A0A167V936_PICAB; Transcription factor MYB35
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-70myb domain protein 5