PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052675-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 353aa    MW: 39342.8 Da    PI: 6.9807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052675-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14138185455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h   Er RR+++++ f++L +llP++     +K +K++i+ +A+ YIksLq
  PSME_00052675-RA 138 THIWTERERRKKMRTMFSTLHSLLPHL----PPKTDKSTIVDEAISYIKSLQ 185
                       67778*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.097134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-16137197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-16137195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-14138189No hitNo description
PfamPF000102.2E-11138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10142190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MADDHQLLHE RLSCEVWEFI TDADADDDDN AAKVDFHIAQ TGSGTEQYSW PLPSDSCGVD  60
AADIMSSFNS PPRKLSASNS PCSVSPNNTN ANTDTTVGGR RETHDNTNQS TSKGANDASV  120
SSKKRCLVGI NMSSDHDTHI WTERERRKKM RTMFSTLHSL LPHLPPKTDK STIVDEAISY  180
IKSLQKSLQA LQNQRLEKVT QSSHATKEFR SFELQDSTEP VVDNWRQASH SISSSIDHTL  240
QTWSSPNVVL SVCGGDAQIG ICSARRPGQL STIFYTLEKH NVHVLTAHIS GDTYRCMYMI  300
HAHERAALCY EVSDGSDGVI PIWGWGNLRD TLKGSSRRLL TKKRLSKLLH WFT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015384271.18e-59transcription factor bHLH95-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-32bHLH family protein