PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052684-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 807aa    MW: 88062.3 Da    PI: 6.1251
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052684-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07372392526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f++ GtC++ d+C +aHg
  PSME_00052684-RA 372 PCPEFRK-GTCRRNDSCEYAHG 392
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127962.6E-8131206IPR020683Ankyrin repeat-containing domain
SMARTSM002480.59136169IPR002110Ankyrin repeat
PROSITE profilePS5029716.361136242IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-12136218IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.21E-13136214IPR020683Ankyrin repeat-containing domain
CDDcd002044.68E-12138217No hitNo description
SMARTSM002480.0012174206IPR002110Ankyrin repeat
PROSITE profilePS5008812.102174209IPR002110Ankyrin repeat
PRINTSPR014158.3E-5175190IPR002110Ankyrin repeat
PRINTSPR014158.3E-5193207IPR002110Ankyrin repeat
SMARTSM003563.9E-5367393IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4372394IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5372392IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803372394IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4399430IPR000571Zinc finger, CCCH-type
SMARTSM0035645402425IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MVLLTAEFQR KPALVDGAML VLDHMSAYYT PTSNQILLKE DILEVSMCGG PEHPKATSVC  60
DTSPTRPREK DNDVAVVEKK SCKMKEVGNI YSILLELAAE NDLLGFQQAA EENLLKIHEA  120
SFWYGRKHGT SRMVLEQRTP VMIAALFGSV DVLNYILSTY ATHGLDINSG GGSDNSTALH  180
CAAAGGSGHV VETVKLLIQS GADVNSLDAF GRRPADVIFV PPRLAHARSI LEEMLNVAVD  240
SSFHLPEFVH EEATNTCGGE YNSSQSVSPF TSPPLSSSPE TSYTTSPSLS PNSIELSKSS  300
CDNIDKKEYP VDPSLPDIKN SIYSTDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR  360
RDPRRFHYSC VPCPEFRKGT CRRNDSCEYA HGVFESWLHP AQYRTRLCKD GTNCARRVCF  420
FAHKPEELRP LYLSTGSAVP SPRMSASMDM ASLAPGSPSS VLIMSPFSPT NPSKNTLFTP  480
PMSPSSPKAG HSSLAGAWSQ SSLPMLHLPG GGSQTSRLRA TLSARDLPLD DLIRGSDNDG  540
QIIDEFSPLS NQARMNATLA ALSGDGSTSG KYRSYGLNSV TPSNLEDLFA SEISLSGVSD  600
SEPSVLSHSM QGHSHLQNQK QLSISTQLLQ ATTQMQQAAT DPQSPGHSFL QSSVHSPSYS  660
LASLGRMSSF SGDFQCHKSN ESLLSPVMSP TINSRVTAFS HQDRRSYSSR DLGAHVLPNS  720
SDWGSPTGKL DWGVQGEELS KFRKSLSFGY RNSNELDSSW IQSMVKEAPL DVHDASLDYS  780
LETSTNGNLE NSDHAVLASW MDEMHLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4412920.0JQ441292.1 Larix decidua isolate AcesapB12 hypothetical protein (0_6683_01) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421436.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024036574.10.0zinc finger CCCH domain-containing protein 30
TrEMBLA0A0C9S9W30.0A0A0C9S9W3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_5835_3235 transcribed RNA sequence
STRINGXP_006421436.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-176CCCH-type zinc finger protein with ARM repeat domain