PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052769-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 301aa    MW: 33138.5 Da    PI: 8.4837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052769-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-10144192555
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       h+ +Er+RRd +++  ++L +llP+     ++++   ++ L + ++YI++Lq
  PSME_00052769-RA 144 HKLVERQRRDTMKTLCSTLISLLPEqY---HKTRHAVSDQLLESIKYIHHLQ 192
                       99***********************66...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.601139191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-10143208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-9143206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-9144195No hitNo description
PfamPF000106.4E-7144192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.009145197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MHATASLPHY HGNMDTSEGI QIRTAIKSVK FGESGNDIDV DATAAKVFDA FSTKRPHDYG  60
LLGTASSGPV MQLDQAVDDD PSWAVKQCSQ KIVANVGDQA RTMTFNSLQA NSLLNSRCRK  120
KKAERAGGHD HMAKSLCTEN GHVHKLVERQ RRDTMKTLCS TLISLLPEQY HKTRHAVSDQ  180
LLESIKYIHH LQNTLIEVQK KRGELSLSST VKTFSNSSRV YENLPASQTC SPSHVPETLP  240
TVRVSKIGSG IQVTANTLSN QIDFSSLLLV LEEAGVEVVS ATLFAINDRV FHSIYAKVFS  300
Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-09bHLH family protein