PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052774-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 252aa    MW: 27411.8 Da    PI: 5.6278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052774-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.7e-122671548
                      -HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  5 TteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                      T+eEde+l+d+ ++      +W+ +a+ +g+ R++k+c++rw +yl
  PSME_00052774-RA 26 TPEEDEKLIDYMTKNCFLgcSWSYVAKQVGLQRCGKSCRLRWINYL 71
                      9*************7555667***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9891775IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-161774IPR009057Homeodomain-like
SMARTSM007171.5E-42173IPR001005SANT/Myb domain
SuperFamilySSF466895.2E-132698IPR009057Homeodomain-like
CDDcd001675.07E-62671No hitNo description
PfamPF139217.2E-102687No hitNo description
Gene3DG3DSA:1.10.10.602.3E-47598IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSCTEGQGKA AVVSSKVEKI RKGLCTPEED EKLIDYMTKN CFLGCSWSYV AKQVGLQRCG  60
KSCRLRWINY LRPGLKQAAI SPQEEQLIIH LQSILGNSNQ ISSQASTSPC LQARGHIYNT  120
AISSRCDGLI DSWTALAPHE AAGSAISTLG CTTTIPAFLD MGDSLKGKTE NGGEVLVNEN  180
ENTIMIDYSS FTSSSGITAW SASYSNSNAA DFTDVYPGIY SAHMVEEYAV QLNEKTAQQT  240
CPPQNPHVQY PY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022635231.14e-33transcription factor MYB46
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-33myb domain protein 46