PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052781-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 219aa    MW: 24613.1 Da    PI: 11.4343
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052781-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.9e-071551812048
                       TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  20 GggtWktIartmgkgRtlkqcksrwqkyl 48 
                       G ++W++Ia  ++ +Rt+ ++k++w++++
  PSME_00052781-RA 155 GEERWSLIAGLLP-RRTD-EIKNHWNTHM 181
                       4449*********.****.*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-9155195IPR009057Homeodomain-like
SuperFamilySSF466892.45E-5155191IPR009057Homeodomain-like
CDDcd001678.48E-4155181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEGKGGREIQ GGRWSYRDRD IYGDMERGER GGEREGGRGI EREGGRGIER EGGRGIEREG  60
GRGIEREGGR GIEREGGRGI EREGGRGIER EGGRGIEREG GRGIERKGGQ NDGGGRQGER  120
ERERRGRGRG RGRGRGRKGG RERNREGGRE RMMEGEERWS LIAGLLPRRT DEIKNHWNTH  180
MKKKLVRRGF EPQSHIPLSQ PNNSNTTYTS VPVAKHEIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126135RGRGRGRGRG
2126136RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-13myb domain protein 5