PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052786-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 199aa    MW: 22610.7 Da    PI: 9.6715
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052786-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-152776148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                      rg W+++Ed +l ++++++G g W++ ++  g   gRt++++k++w+++l
  PSME_00052786-RA 27 RGTWSAQEDMILSEYIRLHGDGGWRKLPQNAGrlPGRTDNEIKNHWNTHL 76
                      89*********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-191880IPR009057Homeodomain-like
SuperFamilySSF466891.72E-142180IPR009057Homeodomain-like
PROSITE profilePS5129419.2272280IPR017930Myb domain
SMARTSM007175.9E-122678IPR001005SANT/Myb domain
PfamPF002492.0E-132776IPR001005SANT/Myb domain
CDDcd001677.22E-112976No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
LWSKWSNRSR ISNIVRSPCC SKEGLNRGTW SAQEDMILSE YIRLHGDGGW RKLPQNAGRL  60
PGRTDNEIKN HWNTHLSKKV SINRSQTNNR QNLINTCSKS PSVIKNHVLK TSTPIRIKSN  120
YWVKHSEMVK VQMDGTVLAA VMDSWCNLLV NNSIREDDLA VTNPGLDVNL VQIQDVTKFS  180
CSMFTSLAVQ QSPHCDDFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ61e-36B8LMJ6_PICSI; Uncharacterized protein
STRINGXP_010047497.12e-22(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-22myb domain protein 3