PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052802-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 202aa    MW: 22610.2 Da    PI: 6.0045
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052802-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.41.9e-2770164599
            DUF260   5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                       Ck+ +++C ++C++  ++ +++ +kfa+++++FGa nv+kl+++lp ++r +a++sl+yeA +r+++P  G+vg+i++lq+q++ l+ ++ ++
  PSME_00052802-RA  70 CKIEQKECMDNCTILYHLLSKDLHKFAILNQVFGACNVIKLIQDLPSNQRVEAIDSLIYEASVRIEEPALGCVGIIQQLQRQISDLELQITST 162
                       **************************************************************************************9999887 PP

            DUF260  98 ke 99 
                       ++
  PSME_00052802-RA 163 QA 164
                       75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.465166IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-2670163IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MARIILHLMG IQDKLPMPTL VPPNTPIDPV QGLPPPSANV IATRQVVVIK MSNTDEKPRI  60
LSSSAAFHDC KIEQKECMDN CTILYHLLSK DLHKFAILNQ VFGACNVIKL IQDLPSNQRV  120
EAIDSLIYEA SVRIEEPALG CVGIIQQLQR QISDLELQIT STQARVQKIH CQQAQRLAFL  180
LGFDSSISEE DDKSNLSTNR EW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-22581733118LOB family transfactor Ramosa2.1
5ly0_B2e-22581733118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P1U38e-48A9P1U3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-30LOB domain-containing protein 1