PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052819-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 554aa    MW: 61809.1 Da    PI: 6.1562
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052819-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000683254123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C++C+k+F +   L  H+r H
  PSME_00052819-RA 32 YFCKICSKRFVSGRALGGHMRAH 54
                      78*******************98 PP
2zf-C2H211.80.00076137154320
                       ETTTTEEESSHHHHHHHH CS
           zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                       C  Cgk Fs++  L  H 
  PSME_00052819-RA 137 CDLCGKEFSSWKGLIEHK 154
                       *****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-53056No hitNo description
PROSITE profilePS501579.9723254IPR007087Zinc finger, C2H2
SMARTSM003550.0273254IPR015880Zinc finger, C2H2-like
PfamPF139129.4E-83454IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681135162IPR007087Zinc finger, C2H2
SMARTSM003550.014135157IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-5136159IPR007087Zinc finger, C2H2
SuperFamilySSF576679.88E-8136157No hitNo description
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SuperFamilySSF576679.88E-8302329No hitNo description
PfamPF139124.2E-10306330IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388307334IPR007087Zinc finger, C2H2
SMARTSM003550.14307329IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280309329IPR007087Zinc finger, C2H2
PfamPF139125.8E-12404429IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224405432IPR007087Zinc finger, C2H2
SMARTSM003552.8405427IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280407427IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MTAMVDVLYP SCQAKELLKN QGREHPLENF SYFCKICSKR FVSGRALGGH MRAHVPPSVP  60
AYTFAETEFQ KSKRPRVSDD KSMEEKVDEE GLERNGRNLM YALRRSPKRS WRFVDLDDSF  120
LLGHGLDSSP IDSSLNCDLC GKEFSSWKGL IEHKNCHCEA HQDSGDDHIE ESHKHETRDK  180
EEPGSKTDSE IEIDHTSENS RKFDKWMKGK GFKRPRYAIQ LNPPEQVVSA TNNEEEDMAM  240
CLVMLASGVN TAQAPQFQMG AADPELGDLK LPTKGFQLLE SIKKKPKYKK IDGPTDLRDD  300
EAKKGRYKCT TCSKVFLSYQ ALGGHRTSHN RVKGCFTQIG DENLKSIEEE ITDEELNTGL  360
DSQLSGNFHK PPAKERNKNF CVQARDETST VEAVAFSGKK TLRVHGCSIC HRVFASGQAL  420
GGHKRCHWGS AGASDTSSSN KETPMQQQMP ARVELLDLNL PAPVDDDWEA EPVDDDCDAE  480
NLNTVDSDGA SYAQTHSPPY LLSLLMGNHQ KEGLFLYNTP SHVSKDDDAD TKLGKDIGLD  540
SKLGLVKDIG FGRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109RRSPKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RQJ11e-144A0A0C9RQJ1_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25048_2114 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-23C2H2-like zinc finger protein