PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052883-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 198aa    MW: 22605.6 Da    PI: 8.6234
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052883-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEde l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00052883-RA 14 KGAWSKEEDEALIAYIRAHGEGSWRSLPKAAGLQRCGKSCRLRWINYL 61
                      79********************************************97 PP
2Myb_DNA-binding582.2e-1867111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+++teEdel++ ++ +lG++ W++Ia++++ gRt++++k++w+++
  PSME_00052883-RA  67 RGSFSTEEDELIITLHSMLGNK-WSLIASRLP-GRTDNEIKNYWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.176961IPR017930Myb domain
SMARTSM007174.2E-121363IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-3013108IPR009057Homeodomain-like
PfamPF002498.4E-151461IPR001005SANT/Myb domain
CDDcd001672.53E-101661No hitNo description
PROSITE profilePS5129427.80662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-2865116IPR009057Homeodomain-like
SMARTSM007172.8E-1766114IPR001005SANT/Myb domain
PfamPF002499.3E-1767111IPR001005SANT/Myb domain
CDDcd001673.38E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRTPCCEKA HTIKGAWSKE EDEALIAYIR AHGEGSWRSL PKAAGLQRCG KSCRLRWINY  60
LRPDLKRGSF STEEDELIIT LHSMLGNKWS LIASRLPGRT DNEIKNYWNT HIKRKLLERG  120
VDPLAHLALK PDQGYIESSS EYHVLPNRRR KPNELFTDFF QQRAPGTLSE QKIISNNNAD  180
DEDVNLDLSI SLPLFSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29131166108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006856762.12e-82myb-related protein 308
SwissprotQ9SZP18e-80MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A3G6JFH77e-83A0A3G6JFH7_PINTA; Myb-related protein 4
STRINGERN182297e-82(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-82myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]