PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00052905-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 320aa MW: 35867.3 Da PI: 5.352

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00052905-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	139.4	2.8e-43	75	166	1	92
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna 92 ppp aflgpkcalwdc+rpaqgs w+qdyc +fh+++alneg+pg+ vlrp+gidlkd+llfa+l ak+ gip+cegaa +kspwna PSME_00052905-RA 75 PPPNAFLGPKCALWDCPRPAQGSYWCQDYCINFHEMVALNEGPPGMGSVLRPGGIDLKDALLFASLGAKTVVNFFGIPKCEGAAPKKSPWNA 166 89*****************************************************************************************9 PP
2	VOZ	122.2	4.9e-38	168	244	131	207
VOZ 131 dysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdslad 207 dy+grgwhe rkqvmke gg+krsyymd ps++fewhlyeye n++d++alyrlelk+vd+kk++k+kv+ d ++ PSME_00052905-RA 168 DYNGRGWHEPRKQVMKEIGGMKRSYYMDRHPSNQFEWHLYEYEKNNCDSCALYRLELKHVDSKKNTKAKVMGDYVNT 244 9**********************************************************************998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
GFYVDHANAE AQNIDGTSRS ENIHTESLLQ NTDESLEAAT QMNQDFDHNI CLSLDPEVEE 60 EHIPKFQGPC PGISPPPNAF LGPKCALWDC PRPAQGSYWC QDYCINFHEM VALNEGPPGM 120 GSVLRPGGID LKDALLFASL GAKTVVNFFG IPKCEGAAPK KSPWNALDYN GRGWHEPRKQ 180 VMKEIGGMKR SYYMDRHPSN QFEWHLYEYE KNNCDSCALY RLELKHVDSK KNTKAKVMGD 240 YVNTEKDHII CEDSHSKVVV EDAYLEPQNS QTLHLRLVKG NATCGISNDH QQGGPYPDVL 300 APPEHIIPCV EHLKMLADVF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657013.1	3e-84	PREDICTED: transcription factor VOZ1
Refseq	XP_018855072.1	1e-84	PREDICTED: transcription factor VOZ1-like
Refseq	XP_019079230.1	3e-84	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	4e-77	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2I4HG63	3e-83	A0A2I4HG63_JUGRE; transcription factor VOZ1-like
STRING	VIT_12s0028g02670.t01	4e-83	(Vitis vinifera)
STRING	XP_010260370.1	1e-83	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	2e-79	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]