PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00052913-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 251aa    MW: 28686.3 Da    PI: 7.4785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00052913-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1363114255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +r+h+++Er+RR++++  f++Lr+llP  +     +K + +e + +Av+Y+++Lq
  PSME_00052913-RA  63 KRNHKMIERQRRKEMKVLFSRLRSLLPDeN---IRGKRTVSEQVLEAVNYVSHLQ 114
                       689*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.58961113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1163130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-1063114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-1063118No hitNo description
SuperFamilySSF474591.44E-1363130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-567119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEDPFLSNYH TDHHAHRFNF VHSCNSETPA CLSRPHLVQT FCNSSPMDGQ LWNRLPGSVT  60
ADKRNHKMIE RQRRKEMKVL FSRLRSLLPD ENIRGKRTVS EQVLEAVNYV SHLQRKIEDL  120
SAEREKMKVN SDQNAKVSFE KIFNKTPPFG GSDRDHPALK INSVGSGVQI WTNTLEHEIV  180
YSDILLSLEE GGLEVVSAAS SAINNKVYHT IHTKVFDLNT FNIDTLYQKL CHLMTTHHAE  240
NQDPPTTEAR A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16273KRNHKMIERQRR
26373RNHKMIERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6773790.0EF677379.1 Picea sitchensis clone WS02766_M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH51e-108B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.17e-20bHLH family protein