PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053166-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C2H2

Protein Properties

Length: 89aa MW: 10368 Da PI: 7.422

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053166-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	66	82	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 + C C k Fs++s+Lk PSME_00053166-RA 66 HNCLECRKIFSTPSSLK 82 67*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.6E-4	63	85	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.683	66	89	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MERFEQMKGS ETRELAMAFR LLAASILGSG VTSDFLSIPW QDLTMSQIEK MLEETKKMIF 60 LNEKVHNCLE CRKIFSTPSS LKDRQNEHR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT109923	2e-93	BT109923.1 Picea glauca clone GQ03213_N01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965828.2	4e-20	zinc finger protein 391
Refseq	XP_002983078.2	4e-20	zinc finger protein 26
TrEMBL	A0A388JQ16	8e-23	A0A388JQ16_CHABU; Uncharacterized protein