PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053172-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 510aa    MW: 55918.4 Da    PI: 6.4664
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053172-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.39.3e-10401459563
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  l+  +  l++e+
  PSME_00053172-RA 401 KRAKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTLLQRDSMGLTNEN 459
                       9********************************************99998887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.3E-18397461IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932399462IPR004827Basic-leucine zipper domain
PfamPF001701.8E-8401457IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-8401455No hitNo description
SuperFamilySSF579596.82E-11401452No hitNo description
CDDcd147032.89E-26402451No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEGVGDNSSS FTDLLLQGGV QSSNPRKQQQ QQMNNSQAGG NNAQSRPLYR SNSQSNNNYA  60
KPPPFPPTSV PSFAQINNVS NPSQNPTHSR SISQPAFLQG NPFGDSNSNL PPPTPAAFPL  120
KRETAASPSL SDPDVTMDEH PIPSPRPPVS PFSADSHSRL DASRTGDVLP PRKGGHRRAH  180
SEIPRQASWD RVGKGVKKEA EWDRDGDLNM EVGDGEDLFS MYIDLDKLNT LNTTSSANPA  240
DIGEGSGESG RKTLNADEDN EDEKAGPDDS GGNSVKEKDI DSGDDDAESE SNEKKDGHKR  300
SFPGGGDSTG RSHAVASHHH PHHVRSVSMD SVLSSFQNSE NPNQKPAPSP TGRNIKHFHS  360
NSMDGSINFK LEFGNGEFSG PELNKIMSNE KLAEIAMTDP KRAKRILANR QSAARSKERK  420
MRYISELERK VQTLQTEATT LSAQLTLLQR DSMGLTNENN ELKLRLQAMD QQAQLRDGKI  480
TSMMFRIVLS IYRSVDMLLE FHFSFRYVCG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1024920.0BT102492.1 Picea glauca clone GQ0195_F24 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026394931.14e-97probable transcription factor PosF21
TrEMBLB8LQ180.0B8LQ18_PICSI; Uncharacterized protein
STRINGXP_010271435.14e-94(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.32e-55bZIP family protein