PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053215-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 203aa    MW: 22500.7 Da    PI: 6.8007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053215-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-18111161255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g++ AeIrdp+      r++lg+f taeeAa a+++a+ +++g
  PSME_00053215-RA 111 HYRGVRNRP-WGKFTAEIRDPTVK--GSRVWLGTFNTAEEAALAYDRAAFRIRG 161
                       69****777.**********9553..3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-12111161IPR001471AP2/ERF domain
PROSITE profilePS5103223.42111169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-31111169IPR001471AP2/ERF domain
SMARTSM003809.1E-37111175IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23111170IPR016177DNA-binding domain
CDDcd000182.26E-30111169No hitNo description
PRINTSPR003677.4E-11112123IPR001471AP2/ERF domain
PRINTSPR003677.4E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNTNILDFIR HHLLEAGDDL DIIDVDQDQP PRNPSFSFTH TASSSSSTNY VTPTTALNSC  60
QNSSSKSTVE DIDYEVTQQQ QYSSSSSSSS INPPQPQEEK NGEIKQSEDM HYRGVRNRPW  120
GKFTAEIRDP TVKGSRVWLG TFNTAEEAAL AYDRAAFRIR GTRALVNFPL ALPHNSESGS  180
AVVHKRKRNS VAAGQWNARL GGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-31107170164ATERF1
3gcc_A2e-31107170164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101098.12e-33ethylene-responsive transcription factor 5
SwissprotQ9LW484e-30ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A023ZYJ74e-54A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-24ethylene responsive element binding factor 6