PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053216-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 218aa    MW: 24349.9 Da    PI: 7.5471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053216-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-18126176255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g++ AeIrdp+      r++lg+f taeeAa a+++a+ +++g
  PSME_00053216-RA 126 HYRGVRNRP-WGKFTAEIRDPTVK--GSRVWLGTFNTAEEAALAYDRAAFRIRG 176
                       7*****777.**********9553..3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-31125184IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23126185IPR016177DNA-binding domain
PROSITE profilePS5103223.42126184IPR001471AP2/ERF domain
SMARTSM003809.1E-37126190IPR001471AP2/ERF domain
CDDcd000185.13E-31126184No hitNo description
PfamPF008474.1E-12126176IPR001471AP2/ERF domain
PRINTSPR003678.2E-11127138IPR001471AP2/ERF domain
PRINTSPR003678.2E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNTNILDFIR HHLLEVEDDL DIIDVDQDQP QRNPSFSFTH TASSRSSTNY LTPTMAICSC  60
QNSSSRNYVT PTTALCSCQN SSSKSTVEDI DNEVIQQQQY SSSSFINPPQ PQEEKNGEIK  120
QSEDRHYRGV RNRPWGKFTA EIRDPTVKGS RVWLGTFNTA EEAALAYDRA AFRIRGTRAL  180
VNFPLALPHN SESGSAVVHK RKRKSVAAGQ WNAGLGGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-32125185161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179303.11e-33pathogenesis-related genes transcriptional activator PTI5
RefseqXP_025684330.11e-33pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A023ZYJ71e-56A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.17e-26ethylene responsive element binding factor 6