PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053293-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 241aa    MW: 27095 Da    PI: 10.0843
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053293-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.71.8e-33331252103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d+++++++sw +++n+fvv+ ++ef+ ++Lp+yF h+nf+SFvRQLn YgF+k+ + +          eF +k Fkkg+k+ll
  PSME_00053293-RA  33 FLVKTYRLVDDPSTDHIVSWGDHKNTFVVWRPKEFSASLLPRYFNHTNFSSFVRQLNNYGFRKIVRGR---------CEFVNKLFKKGQKHLL 116
                       9***************************************************************9988.........67************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+rkk +
  PSME_00053293-RA 117 THIQRKKPS 125
                       ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.8E-4829122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-3630122IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.01E-3131122IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.3E-183356IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2933122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MADQEVANAD RIVMVGGGSV KDAAAGRFEA APFLVKTYRL VDDPSTDHIV SWGDHKNTFV  60
VWRPKEFSAS LLPRYFNHTN FSSFVRQLNN YGFRKIVRGR CEFVNKLFKK GQKHLLTHIQ  120
RKKPSTISTT QNMEHDKSCS SFPPISSTQQ SDVRAAPPSL SVLEIETLRR NNYLLISEIA  180
RLQNICSGDI RLLIRPNTRN PPLIDMGRSK IDNPSPSSSI TDVTEEIGMN PPPRLFGVPL  240
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-222012216129Heat shock factor protein 1
5d5v_B2e-222012216129Heat shock factor protein 1
5d5v_D2e-222012216129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9C6351e-45HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLH9WUJ36e-74H9WUJ3_PINTA; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-48heat shock transcription factor B4