PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053369-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 476aa    MW: 52026.7 Da    PI: 6.4497
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053369-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.5e-30262320259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp++v++tY+++Hnh+
  PSME_00053369-RA 262 SDHWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERDRTDPSMVIMTYTSDHNHP 320
                       69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-31255322IPR003657WRKY domain
PROSITE profilePS5081133.419256322IPR003657WRKY domain
SuperFamilySSF1182901.19E-25259322IPR003657WRKY domain
SMARTSM007741.1E-34261321IPR003657WRKY domain
PfamPF031068.6E-25263320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEKDHDEGDL AAVVRASGLS AAYKWQTHHS LISEERASRT LITDLDTANN PSDPPPTLIA  60
HSKSTEPHVV LPNLSRNKSA CMATGPVEMQ AEIVVNPYYN GNLLSRYGSA SASLCSSLFE  120
IPEKYSTGPS LRFLSTAAAA PMSSDAEKTN PRKLEGMNQY PSKNEGMNHG LACGTAASSE  180
ISRIPKVVAE ISKKDQTNSL NSPSRKVAQG SSASSSSLVA PKVASTNSKC EAAKRRKTQQ  240
KRVVCVPAAV GSNKPSGEDV PSDHWAWRKY GQKPIKGSPY PRGYYRCSSS KGCLARKQVE  300
RDRTDPSMVI MTYTSDHNHP WPTHRSSLAG SIRQTRSLKS EELDQCPNQE VVGSKPNDNI  360
DMHNTSQNGN FASIMEPSKA ATTEDAGPTF NEERLFNIHD EDVSGLHISV SALIYNNDDF  420
FADLPEPMNM QFARQPVDDQ SLYDDDPDST VVDPFNLFNW STTTNISTFG EDKTTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-19241323680Disease resistance protein RRS1
5w3x_D2e-19241323680Disease resistance protein RRS1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1110251e-58BT111025.1 Picea glauca clone GQ03231_H12 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-50WRKY DNA-binding protein 35