PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053379-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 300aa    MW: 32354.7 Da    PI: 8.3073
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053379-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.7e-39891901101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+k+Cv+apyf +++ +++fa+vhk+FGasnv+kll +lp  +r +a+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+a
  PSME_00053379-RA  89 PCGACKFLRRKCVKGCVFAPYFGSDEgAAHFAAVHKIFGASNVSKLLLHLPMPDRCEAVVTISYEAQARLQDPVYGCVAHIFALQQQVASLQA 181
                       7*********************998879***************************************************************** PP

            DUF260  93 elallkeel 101
                       ela ++++l
  PSME_00053379-RA 182 ELAFVQAQL 190
                       ****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.888190IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-3889187IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVVLHKSATA SPPFCRPARN SLSALPSALL RSPHRTPSSA IASASFGIFT LRPQRGDKDR  60
KAGEQYRGSL RNPSGHQFES CTMNGGGAPC GACKFLRRKC VKGCVFAPYF GSDEGAAHFA  120
AVHKIFGASN VSKLLLHLPM PDRCEAVVTI SYEAQARLQD PVYGCVAHIF ALQQQVASLQ  180
AELAFVQAQL VSRVSSGSAS ISTNHPVMSS SSYSQHLQFP AHLSLPCQPI PQPYNALLSR  240
VKEENSCGFA TYMDCDFSVS PSDSSSPLME VLQRCRSLEE NEGEDNGELQ ALAHALLRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-38822104131LOB family transfactor Ramosa2.1
5ly0_B9e-38822104131LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390481.15e-64uncharacterized protein LOC112289471
TrEMBLD5A9D31e-113D5A9D3_PICSI; Uncharacterized protein
STRINGPP1S261_2V6.16e-65(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-55lateral organ boundaries-domain 29