PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053390-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 189aa    MW: 21346.2 Da    PI: 8.1068
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053390-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.93.4e-14751284699
            DUF260  46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                        +++ +e+r +++ss+vyeA  r+rdPv+G++gvi++l++++++l+++la++++
  PSME_00053390-RA  75 CQQITKEQRGEVVSSMVYEATERLRDPVHGCLGVINDLHKKIAELESQLASTEA 128
                       68999********************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.80527130IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-1276127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
RSSSSILSTF RYDGKRRRRD KQYRLKARAV ACIFLCCLQD PEKEMYREMP SRAIFPAGRS  60
RKVPIGSQSL WKRPCQQITK EQRGEVVSSM VYEATERLRD PVHGCLGVIN DLHKKIAELE  120
SQLASTEAAL ANISVQYGNL LTLITGCNEG SDPNFYSAST QESEDTDTSR SPTVVNDVDP  180
VQLWDALWI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11520RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQI92e-38B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-18LOB domain-containing protein 1