PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053408-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Dof

Protein Properties

Length: 494aa MW: 53415.8 Da PI: 4.8865

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053408-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.6	5.6e-38	100	160	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprCds +tkfCyy ny+++qPr+fCk+C+ryWt GG++rnvPvG grrknk+s+ PSME_00053408-RA 100 PDKLLPCPRCDSLDTKFCYYSNYNVNQPRHFCKNCQRYWTVGGTMRNVPVGDGRRKNKHST 160 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-30	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.071	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-23	108	157	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MGHDDEYTEE AVEDTGPYSP ELVPLEKVVK ELEEEPGSFS PELLHDSEGE EDISFHGGTT 60 ATESDLRSEN LEEKEAKESE NLEEKESKES ENQDKILKKP DKLLPCPRCD SLDTKFCYYS 120 NYNVNQPRHF CKNCQRYWTV GGTMRNVPVG DGRRKNKHST SHYRHMMMID GLTTARADAL 180 DAAAHHQVIP NAHSSSSRVL KGSHILLPLD VESASGTILN FGPDFPLCES MSTTLNLADQ 240 TVVTRKAFIN KEDEKGPLDC GENIYDTSCE SSITASTTAE KEEASKSFRT IPQVDQGGMM 300 GWPSNVPPPQ HYYGGGPWAY GWNFCWGGRS VTGGPSGIAY AAESGNTSAG SWNNGTSGAG 360 PPGWGGGTWN MPFSTQALPI TGGASSGPSS SSASSSGSAT LGKHSRDITQ SEGKHDGCLW 420 VPKTIRIDDP DEATRSSIWT TLGIGNKPES ITTSGIFKAF QPKTEVKDSV KVSTQGLRSN 480 PVALSRSMAI QESS

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MGHDDEYTEE AVEDTGPYSP ELVPLEKVVK ELEEEPGSFS PELLHDSEGE EDISFHGGTT  60
ATESDLRSEN LEEKEAKESE NLEEKESKES ENQDKILKKP DKLLPCPRCD SLDTKFCYYS  120
NYNVNQPRHF CKNCQRYWTV GGTMRNVPVG DGRRKNKHST SHYRHMMMID GLTTARADAL  180
DAAAHHQVIP NAHSSSSRVL KGSHILLPLD VESASGTILN FGPDFPLCES MSTTLNLADQ  240
TVVTRKAFIN KEDEKGPLDC GENIYDTSCE SSITASTTAE KEEASKSFRT IPQVDQGGMM  300
GWPSNVPPPQ HYYGGGPWAY GWNFCWGGRS VTGGPSGIAY AAESGNTSAG SWNNGTSGAG  360
PPGWGGGTWN MPFSTQALPI TGGASSGPSS SSASSSGSAT LGKHSRDITQ SEGKHDGCLW  420
VPKTIRIDDP DEATRSSIWT TLGIGNKPES ITTSGIFKAF QPKTEVKDSV KVSTQGLRSN  480
PVALSRSMAI QESS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC688684	0.0	KC688684.1 Pinus pinaster Dof10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	T2B8P6	0.0	T2B8P6_PINPS; Dof10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-53	cycling DOF factor 2