PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053421-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 357aa MW: 40306.6 Da PI: 4.9001

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053421-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.4e-13	145	192	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f++L +llP++ +K +K++i+ +A+ YIksLq PSME_00053421-RA 145 THIWTERERRKKMRTMFSTLHSLLPHL----PPKTDKSTIVDEAIGYIKSLQ 192 78889*******************6....39****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.716	141	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.56E-14	144	196	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-15	144	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-16	144	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-11	145	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-9	149	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MADDDQLLHA TSDRLSSEVW QFFPDDNYND KIDFHIAQMH ELHAVSGTVE YSWPLPLDSC 60 GVDAADIMSS FNSPPRKLSA STSLCSVSRG DHDVSPDNTN TNTTVTLAVG RDSHDNTNQS 120 TCDASVSSKK RCLRGNITLS ADHETHIWTE RERRKKMRTM FSTLHSLLPH LPPKTDKSTI 180 VDEAIGYIKS LQKSLQALQN QRLEKTRSAA TKVEFRSFEL QDSTDNWRRA SHSISYSIDH 240 TLQTWSSPNV VLSVCGEDAQ IGICSARRPG QLATIFYTLE KHNVHVLTAH ISADTYRCMY 300 MIHAHMDDED EVKVEAKVDI VKVAVETDED DRKDEEDVPW ENDFTNGLFD FVGIEDE

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MADDDQLLHA TSDRLSSEVW QFFPDDNYND KIDFHIAQMH ELHAVSGTVE YSWPLPLDSC  60
GVDAADIMSS FNSPPRKLSA STSLCSVSRG DHDVSPDNTN TNTTVTLAVG RDSHDNTNQS  120
TCDASVSSKK RCLRGNITLS ADHETHIWTE RERRKKMRTM FSTLHSLLPH LPPKTDKSTI  180
VDEAIGYIKS LQKSLQALQN QRLEKTRSAA TKVEFRSFEL QDSTDNWRRA SHSISYSIDH  240
TLQTWSSPNV VLSVCGEDAQ IGICSARRPG QLATIFYTLE KHNVHVLTAH ISADTYRCMY  300
MIHAHMDDED EVKVEAKVDI VKVAVETDED DRKDEEDVPW ENDFTNGLFD FVGIEDE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011624414.1	1e-61	transcription factor bHLH95
TrEMBL	A0A067GWX6	3e-59	A0A067GWX6_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006434734.1	2e-59	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	2e-32	bHLH family protein