PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053451-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 352aa MW: 39085.6 Da PI: 4.5521

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053451-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2.1e-11	178	220	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ErrRR ++N+++ +Lr+l+Pk +K++Ka+i+ A+ Y+ Lq PSME_00053451-RA 178 LERRRRGQLNERLYTLRSLVPKI-----TKMDKASIVGDAISYVEGLQ 220 7*******************7.....7*************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.027	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-16	176	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-15	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-15	177	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.04E-12	177	224	No hit	No description
Pfam	PF00010	3.9E-9	178	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MCANSSFDMF DINALALMEP GTAHVGDHNG LLFCQDHSVA ASLIPMCPSS SSSSLAGEQH 60 GWTFQTRDSL WASQDLPVKP DESFQPPFLH EATGPITRND IDNLSSFTQD NSLFHPLGGL 120 DISCSETNLY GGSIPQGRVD KKEPDCDYSS DEMDDLKDED EKAGSQDGRS SQPKTLLLER 180 RRRGQLNERL YTLRSLVPKI TKMDKASIVG DAISYVEGLQ RELKDIRTEI EELRSNVSRQ 240 IESTTLERSN SAGSDLDYEM QPYEEGNGNS PTSKEALTLS IIEVNVSQIK DRMFHIKIDC 300 QKNPGVLVRL MRALESIQLD FQNASVSSVD GHMIKTAIVK VYPVNYETVK SD

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MCANSSFDMF DINALALMEP GTAHVGDHNG LLFCQDHSVA ASLIPMCPSS SSSSLAGEQH  60
GWTFQTRDSL WASQDLPVKP DESFQPPFLH EATGPITRND IDNLSSFTQD NSLFHPLGGL  120
DISCSETNLY GGSIPQGRVD KKEPDCDYSS DEMDDLKDED EKAGSQDGRS SQPKTLLLER  180
RRRGQLNERL YTLRSLVPKI TKMDKASIVG DAISYVEGLQ RELKDIRTEI EELRSNVSRQ  240
IESTTLERSN SAGSDLDYEM QPYEEGNGNS PTSKEALTLS IIEVNVSQIK DRMFHIKIDC  300
QKNPGVLVRL MRALESIQLD FQNASVSSVD GHMIKTAIVK VYPVNYETVK SD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.4	4e-29	bHLH family protein