PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00053461-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 336aa MW: 37591.5 Da PI: 7.6773

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00053461-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32	2.2e-10	166	214	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++++ + L +llP+ +++K +e L + v+YI++Lq PSME_00053461-RA 166 HKFAERERRNKMKRLCSSLMSLLPEeY---HKPKHPLSEQLLESVNYIRHLQ 214 8999*******************66...9999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.007	161	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-11	165	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.48E-8	166	218	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-9	166	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-7	166	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0024	167	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MEDFQLSSSA YLAAACLPHY DENIIAHEDI QIRTPVKSNK FHVQPRTCIN DDDAHAPIIF 60 DASFDGLSSK TPHDYGLLGT ASYKPMVQHE QTAEDYSSPA VTQCWQKFVA NVGEPAEILI 120 SNSRASALLN SRNSVLQQTR SHRCKKAGAD EGHKASTGCI GNGHVHKFAE RERRNKMKRL 180 CSSLMSLLPE EYHKPKHPLS EQLLESVNYI RHLQDKVKEL IKKRDELILL ATVKPFSNNS 240 SNAKTLQVLE TLPTIRVSRF GSGIQVTANC FRNQIDVSSI VMVLEEAGVE VASATVSAIN 300 DRVFYSIHSK QLSDSRHFDN AVLHGRIDQV MKETFH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	1e-20	bHLH family protein