PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053503-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family SBP
Protein Properties Length: 454aa    MW: 49992.5 Da    PI: 8.5407
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053503-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.79.4e-40150227178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cq+egC+a+ls+ak+yhrrhkvCe hska++v+v g  qrfCqqCsrfh  sefDe+krsCr+rLa+hn+rrrk+q+
  PSME_00053503-RA 150 QCQAEGCKANLSSAKHYHRRHKVCELHSKASTVVVGGFIQRFCQQCSRFHPRSEFDEGKRSCRKRLADHNRRRRKPQP 227
                       5**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-32145212IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.804148225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.02E-37149229IPR004333Transcription factor, SBP-box
PfamPF031104.8E-30151224IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MQTERPDNSS WMSSHNSDQP KPRNLMSSSQ LVHGYPVSAL SRNSSAFFDS PGLHRQDQFV  60
DPCSMWRLGN SSDHTALEQP HGVIEKRGQP VHGCFFVKAE EELDFFPARM GLNLAGTGST  120
IYSGVASQET GHGNRFCRTG SPCTGSQIPQ CQAEGCKANL SSAKHYHRRH KVCELHSKAS  180
TVVVGGFIQR FCQQCSRFHP RSEFDEGKRS CRKRLADHNR RRRKPQPNPC TASQCQAGTS  240
TALENENKKL KGSSGHDATG VQITPNISTS TSTTPSLMTS VPMLRFPNSY KGQVPVFQGT  300
SDDKKSCVEF LYASIAHETG SDLSVEGRII SDNRIESSEY ELVHPCSLRP GLLASEIAGR  360
FSRPAPVDIQ YSQSLFSIKN SNSSLRSVDQ SSKSSLDLQI FSSSNDISSM KNGSSNWILN  420
GSTTDQNVRA YDKIHQSPES TRSTYGPAIK WDEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28146224684squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207224KRSCRKRLADHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1100430.0BT110043.1 Picea glauca clone GQ03215_D14 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-44squamosa promoter binding protein-like 8