PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053603-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 158aa    MW: 18646.6 Da    PI: 8.9173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053603-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-095398755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       +E+ RR+r++s   +L +llP +   +  Kl+     e+A++YI++L+
  PSME_00053603-RA 53 FAEQMRRKRMKSLCTQLESLLPAS---TPAKLDRCGLFEEAINYIRKLE 98
                      58*********************9...99*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1142111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.77E-64699No hitNo description
PROSITE profilePS5088811.9034697IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1148111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-452103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-65498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MYLNVSKCDR QLDCRATFEL DLAELQDYTD LQEKLWRDVD HMMKFSTKET QIFAEQMRRK  60
RMKSLCTQLE SLLPASTPAK LDRCGLFEEA INYIRKLEEN MHQLKKKKDS LLAIQSGKTV  120
NENTEIKVAL QFYGREAIIN ITGQREPRHM WRSLKIMG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0859561e-120EF085956.1 Picea sitchensis clone WS02715_B03 unknown mRNA.
GenBankEF0867281e-120EF086728.1 Picea sitchensis clone WS02747_G23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-81A9NYK8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-07bHLH family protein