PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053709-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 124aa    MW: 14768.5 Da    PI: 9.5481
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053709-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.74.3e-273693259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                      dDgy+W+KYGqK +k  ++pr Y+rC  +gCpvkk+ver+++dp++v +tY+g Hnh+
  PSME_00053709-RA 36 DDGYEWKKYGQKRIKRRNHPRYYFRCRKKGCPVKKQVERCSHDPEYVLTTYNGIHNHT 93
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-292394IPR003657WRKY domain
SuperFamilySSF1182907.85E-262893IPR003657WRKY domain
PROSITE profilePS5081126.7163095IPR003657WRKY domain
SMARTSM007746.9E-273594IPR003657WRKY domain
PfamPF031061.0E-223692IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MEYGTGASTS FRDGEDYCKQ GEVVCVRTKS DEIIIDDGYE WKKYGQKRIK RRNHPRYYFR  60
CRKKGCPVKK QVERCSHDPE YVLTTYNGIH NHTVVDFSSS PSSHHRNSYD LRVQVIDRRP  120
WHRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-202494373WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1561070.0KC156107.1 UNVERIFIED: Pseudotsuga menziesii WRKY transcription factor 59-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027149513.11e-23probable WRKY transcription factor 51 isoform X2
SwissprotQ93WY42e-22WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A068UIE47e-22A0A068UIE4_COFCA; Uncharacterized protein
TrEMBLA0A0U2K4B58e-22A0A0U2K4B5_9ROSI; WRKY1 (Fragment)
TrEMBLQ09I606e-22Q09I60_PHYPA; WRKY transcription factor 4 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-24WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Yu Y, et al.
    MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering.
    Plant Sci., 2013. 212: p. 1-9
    [PMID:24094048]
  2. Yang L, et al.
    PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa.
    Sci Rep, 2016. 6: p. 18643
    [PMID:26819184]
  3. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  4. Han Y, et al.
    WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis.
    Plant Mol. Biol., 2019. 99(1-2): p. 149-159
    [PMID:30617455]